VISIONET: Visualizing Transcriptomic Profiles Integrated with Overlapping Transcription Factor Networks
Interpret Large Networks through Filtering
Do you have multiple ChIP-Seq files?
No (Please prepare a single network file (GraphML, TXT, CSV format)
Yes (Please prepare each file in COD format)
Do you have multiple microarray files?
No (Please prepare a single normalized microarray file in TXT format)
Yes (Please prepare two SOFT files, the first for treatment and the second for control)
Upload network file (examples:
GraphML
,
Txt
, or
Csv
):
Upload microarray file (example
here
):
Additional options (FOR ADVANCED USERS)
Layout method:
VISIONET custom layout
Fruchterman-Reingold
Harel Koren Fast Multiscale
Sugiyama
Random Layout
No Layout (GraphML input)
Minimum expression fold-change:
Show vertex label? (May cause clutter in dense graph)